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1

Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm

Wunsch, Benjamin H., Smith, Joshua T., Gifford, Stacey M., Wang, Chao, Brink, Markus, Bruce, Robert L., Austin, Robert H., Stolovitzky, Gustavo, Astier, Yann

Journal:

Nature Nanotechnology

Année:

2016

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2016

2

Mitochondrial origins of fractional control in regulated cell death

Santos, Luís C., Vogel, Robert, Chipuk, Jerry E., Birtwistle, Marc R., Stolovitzky, Gustavo, Meyer, Pablo

Journal:

Nature Communications

Année:

2019

Langue:

english

Fichier:

PDF, 1.87 MB

english, 2019

3

On-Chip Liquid Biopsy: Progress in Isolation of Exosomes for Early Diagnosis of Cancer

Cheol Kim, Sung, Dogra, Navneet, Wunsch, Benjamin H., Smith, Joshua T., Gifford, Stacey M., Stolovitzky, Gustavo, Hu, Huan, Meyer, Pablo

Journal:

Biophysical Journal

Année:

2017

Langue:

english

Fichier:

PDF, 42 KB

english, 2017

4

[IEEE 2018 IEEE 12th International Conference on Semantic Computing (ICSC) - Laguna Hills, CA (2018.1.31-2018.2.2)] 2018 IEEE 12th International Conference on Semantic Computing (ICSC) - Predictive Linguistic Markers of Suicidality in Poets

Agurto, Carla, Pataranutaporn, Pat, Eyigoz, Elif K., Stolovitzky, Gustavo, Cecchi, Guillermo

Année:

2018

Langue:

english

Fichier:

PDF, 418 KB

english, 2018

5

Faithfulness-boost effect: Loyal teammate selection correlates with skill acquisition improvement in online games

Landfried, Gustavo, Fernández Slezak, Diego, Mocskos, Esteban, Stolovitzky, Gustavo

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 5.74 MB

english, 2019

6

Reverse engineering of regulatory networks in human B cells

Basso, Katia, Margolin, Adam A, Stolovitzky, Gustavo, Klein, Ulf, Dalla-Favera, Riccardo, Califano, Andrea

Journal:

Nature Genetics

Année:

2005

Langue:

english

Fichier:

PDF, 828 KB

english, 2005

7

Dialogue on Reverse-Engineering Assessment and Methods : The DREAM of High-Throughput Pathway Inference

GUSTAVO STOLOVITZKY, DON MONROE, ANDREA CALIFANO

Journal:

Annals of the New York Academy of Sciences

Année:

2007

Langue:

english

Fichier:

PDF, 171 KB

english, 2007

8

Base-By-Base Ratcheting of Single Stranded DNA through a Solid-State Nanopore

Luan, Binquan, Martyna, Glenn, Stolovitzky, Gustavo, Peng, Hongbo, Polonsky, Stas, Rossnagel, Steve

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 35 KB

english, 2010

9

Intermittency, the second-order structure function, and the turbulent energy-dissipation rate

Stolovitzky, Gustavo, Sreenivasan, K. R.

Journal:

Physical Review E

Année:

1995

Langue:

english

Fichier:

PDF, 133 KB

english, 1995

10

A simple model of chaotic advection and scattering

Stolovitzky, Gustavo, Kaper, Tasso J., Sirovich, Lawrence

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Année:

1995

Langue:

english

Fichier:

PDF, 2.75 MB

english, 1995

11

Fabricatable nanopore sensors with an atomic thickness

Luan, Binquan, Bai, Jingwei, Stolovitzky, Gustavo

Journal:

Applied Physics Letters

Année:

2013

Langue:

english

Fichier:

PDF, 886 KB

english, 2013

12

R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics

Ahsen, Mehmet Eren, Vogel, Robert, Stolovitzky, Gustavo A.

Journal:

Journal of Computational Biology

Année:

2020

Fichier:

PDF, 264 KB

2020

13

COSIFER: a python package for the consensus inference of molecular interaction networks

Manica, Matteo, Bunne, Charlotte, Mathis, Roland, Cadow, Joris, Ahsen, Mehmet Eren, Stolovitzky, Gustavo A, MartÃnez, MarÃa RodrÃguez, Valencia, Alfonso

Journal:

Année:

2020

Fichier:

PDF, 225 KB

2020

14

Characterization of stationary distributions using conditional expectations

Gustavo Stolovitzky, Emily S.C. Ching

Journal:

Physics Letters A

Année:

1999

Langue:

english

Fichier:

PDF, 67 KB

english, 1999

15

Non-isothermal inertial Brownian motion

Gustavo Stolovitzky

Journal:

Physics Letters A

Année:

1998

Langue:

english

Fichier:

PDF, 1.52 MB

english, 1998

16

Gene Expression Dynamics during Germinal Center Transit in B Cells

ULF KLEIN, YUHAI TU, GUSTAVO A. STOLOVITZKY, JEFFREY L. KELLER, JOSEPH HADDAD JR., VLADAN MILJKOVIC, GIORGIO CATTORETTI, ANDREA CALIFANO, RICCARDO DALLA-FAVERA

Journal:

Annals of the New York Academy of Sciences

Année:

2003

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2003

17

Tracking CD40 Signaling during Normal Germinal Center Development by Gene Expression Profiling

KATIA BASSO, ULF KLEIN, HUIFENG NIU, GUSTAVO A. STOLOVITZKY, YUHAI TU, ANDREA CALIFANO, GIORGIO CATTORETTI, RICCARDO DALLA-FAVERA

Journal:

Annals of the New York Academy of Sciences

Année:

2003

Langue:

english

Fichier:

PDF, 162 KB

english, 2003

18

Preface

Gustavo Stolovitzky, Pascal Kahlem, Andrea Califano

Journal:

Annals of the New York Academy of Sciences

Année:

2009

Langue:

english

Fichier:

PDF, 49 KB

english, 2009

19

Lessons from the DREAM2 Challenges : A Community Effort to Assess Biological Network Inference

Gustavo Stolovitzky, Robert J. Prill, Andrea Califano

Journal:

Annals of the New York Academy of Sciences

Année:

2009

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2009

20

Preface

Gustavo Stolovitzky, Andrea Califano

Journal:

Annals of the New York Academy of Sciences

Année:

2007

Langue:

english

Fichier:

PDF, 39 KB

english, 2007

21

Feynman's Ratchet and Pawl

Marcelo O. Magnasco, Gustavo Stolovitzky

Journal:

Journal of Statistical Physics

Année:

1998

Langue:

english

Fichier:

PDF, 915 KB

english, 1998

22

Gene selection in microarray data: the elephant, the blind men and our algorithms

Gustavo Stolovitzky

Journal:

Current Opinion in Structural Biology

Année:

2003

Langue:

english

Fichier:

PDF, 237 KB

english, 2003

23

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

Adam A Margolin, Ilya Nemenman, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, Andrea Califano

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 797 KB

english, 2006

24

ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding

Adam A Margolin, Teresa Palomero, Adolfo A Ferrando, Andrea Califano, Gustavo Stolovitzky

Journal:

BMC Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 186 KB

english, 2007

25

Slowing and controlling the translocation of DNA in a solid-state nanopore

Martyna, Glenn, Luan, Binquan, Stolovitzky, Gustavo

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2012

26

Motif-based construction of a functional map for mammalian olfactory receptors

Agatha H. Liu, Xinmin Zhang, Gustavo A. Stolovitzky, Andrea Califano, Stuart J. Firestein

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 531 KB

english, 2003

27

Making the most of it: pathway reconstruction and integrative simulation using the data at hand

J.Jeremy Rice, Gustavo Stolovitzky

Journal:

Drug Discovery Today: BIOSILICO

Année:

2004

Langue:

english

Fichier:

PDF, 158 KB

english, 2004

28

Ising Model of Cardiac Thin Filament Activation with Nearest-Neighbor Cooperative Interactions

Rice, John Jeremy, Stolovitzky, Gustavo, Tu, Yuhai, de Tombe, Pieter P.

Journal:

Biophysical Journal

Année:

2003

Langue:

english

Fichier:

PDF, 263 KB

english, 2003

29

Functionalizing a Nanopore with Nano-Electrodes Towards the Control of the Translocation of DNA with Single Base Resolution

Peng, Hongbo, Luan, Binquan, Waggoner, Philip S., Harrer, Stefan, Martyna, Glenn J., Polonsky, Stanislav, Rossnagel, Stephen M., Stolovitzky, Gustavo

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 33 KB

english, 2011

30

Characterizing and Controlling the Motion of ssDNA in a Solid-State Nanopore

Luan, Binquan, Stolovitzky, Gustavo, Peng, Hongbo, Harrer, Stefan, Waggoner, Philip, Polonsky, Stas, Rossnagel, Stephen, Martyna, Glenn

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 116 KB

english, 2011

31

Characterizing and Controlling the Motion of ssDNA in a Solid-State Nanopore

Luan, Binquan, Martyna, Glenn, Stolovitzky, Gustavo

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2011

32

Tribological Effects on DNA Translocation in a Nanochannel Coated with a Self-Assembled Monolayer

Luan, Binquan, Afzali, Ali, Harrer, Stefan, Peng, Hongbo, Waggoner, Philip, Polonsky, Stas, Stolovitzky, Gustavo, Martyna, Glenn

Journal:

Journal of Physical Chemistry B

Année:

2010

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2010

33

An electro-hydrodynamics-based model for the ionic conductivity of solid-state nanopores during DNA translocation

Luan, Binquan, Stolovitzky, Gustavo

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 510 KB

english, 2013

34

Comparison of Amersham and Agilent Microarray Technologies Through Quantitative Noise Analysis

Held, G.A., Duggar, Keith, Stolovitzky, Gustavo

Journal:

Omics A Journal of Integrative Biology

Année:

2006

Langue:

english

Fichier:

PDF, 416 KB

english, 2006

35

Base-By-Base Ratcheting of Single Stranded DNA through a Solid-State Nanopore

Luan, Binquan, Peng, Hongbo, Polonsky, Stas, Rossnagel, Steve, Stolovitzky, Gustavo, Martyna, Glenn

Journal:

Physical Review Letters

Année:

2010

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2010

36

Controlling Motion of DNA in a Nanochannel with Transverse Alternating-Electric-Voltages

Luan, Binquan, Wang, Chao, Royyuru, Ajay, Stolovitzky, Gustavo

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 75 KB

english, 2014

37

Characterizing Contact Friction Between DNA and a Chemically Modified Nanopore Surface

Luan, Binquan, Stolovitzky, Gustavo

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 74 KB

english, 2012

38

Efficiency of DNA Replication in the Polymerase Chain Reaction

Gustavo Stolovitzky and Guillermo Cecchi

Journal:

Proceedings of the National Academy of Sciences

Année:

1996

Langue:

english

Fichier:

PDF, 1.02 MB

english, 1996

39

Systematic and Fully Automated Identification of Protein Sequence Patterns

Hart, Reece K., Royyuru, Ajay K., Stolovitzky, Gustavo, Califano, Andrea

Journal:

Journal of Computational Biology

Année:

2000

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2000

40

RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue

Califano, Andrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 36 KB

english, 2014

41

Nanopore in metal-dielectric sandwich for DNA position control

Polonsky, Stas, Rossnagel, Steve, Stolovitzky, Gustavo

Journal:

Applied Physics Letters

Année:

2007

Langue:

english

Fichier:

PDF, 536 KB

english, 2007

42

Toward better benchmarking: challenge-based methods assessment in cancer genomics

Boutros, Paul C, Margolin, Adam A, Stuart, Joshua M, Califano, Andrea, Stolovitzky, Gustavo

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 543 KB

english, 2014

43

Effects of a large-scale mean circulating flow on passive scalar statistics in a model of random advection

Ching, Emily S. C., Pang, C. S., Stolovitzky, Gustavo

Journal:

Physical Review E

Année:

1998

Langue:

english

Fichier:

PDF, 255 KB

english, 1998

44

Periodic forcing of a Brownian particle

Faucheux, Luc P., Stolovitzky, Gustavo, Libchaber, Albert

Journal:

Physical Review E

Année:

1995

Fichier:

PDF, 1.89 MB

1995

45

Limitations of random multipliers in describing turbulent energy dissipation

Nelkin, Mark, Stolovitzky, Gustavo

Journal:

Physical Review E

Année:

1996

Langue:

english

Fichier:

PDF, 133 KB

english, 1996

46

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue

Califano, Andrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 37 KB

english, 2013

47

Statistical Dependence of Inertial Range Properties on Large Scales in a High-Reynolds-Number Shear Flow

Sreenivasan, Katepalli R., Stolovitzky, Gustavo

Journal:

Physical Review Letters

Année:

1996

Langue:

english

Fichier:

PDF, 139 KB

english, 1996

48

Coherent Structures and Conditional Statistics in Inhomogeneous Turbulent Mixing

Stolovitzky, Gustavo, Aider, Jean Luc, Wesfreid, Jose Eduardo

Journal:

Physical Review Letters

Année:

1997

Langue:

english

Fichier:

PDF, 257 KB

english, 1997

49

Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue

Califano, Andrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Année:

2012

Langue:

english

Fichier:

PDF, 30 KB

english, 2012

50

Controlling the motion of DNA in a nanochannel with transversal alternating electric voltages

Luan, Binquan, Wang, Chao, Royyuru, Ajay, Stolovitzky, Gustavo

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2014